STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ00628.1Two component transcriptional regulator, LytTR family. (236 aa)    
Predicted Functional Partners:
SHJ77231.1
Histidine kinase.
  
  0.845
SHI98532.1
Sensor histidine kinase, LytS/YehU family.
  
  0.843
SHJ60118.1
Tetratricopeptide repeat-containing protein.
  
  0.832
SHJ76586.1
Histidine kinase.
 
 0.825
SHJ56450.1
Histidine kinase.
 
 0.824
SHJ48841.1
Histidine kinase.
 
 0.823
SHI34029.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.821
SHJ37306.1
Histidine kinase.
 
 0.818
SHJ60450.1
Tetratricopeptide repeat-containing protein.
  
  0.815
SHJ84356.1
Tetratricopeptide repeat-containing protein.
  
  0.810
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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