STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ05562.1Glycosyl hydrolases family 2. (584 aa)    
Predicted Functional Partners:
SHJ05592.1
Beta galactosidase small chain.
     0.994
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
    
 0.775
SHJ03366.1
alpha-L-rhamnosidase.
  
   0.680
SHJ04689.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
  
 
0.674
SHJ10023.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
  
 
0.673
SHJ28911.1
exo-1,4-beta-D-glucosaminidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.641
SHJ35185.1
6-phosphofructokinase 2; Belongs to the carbohydrate kinase PfkB family.
   
    0.617
SHJ05501.1
Glycosyl hydrolases family 16.
 
     0.588
SHJ08775.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.558
SHJ27444.1
Aldose 1-epimerase.
  
 
 0.558
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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