STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ06998.1Starch-binding associating with outer membrane. (494 aa)    
Predicted Functional Partners:
SHJ07027.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.958
SHJ06931.1
MFS transporter, YQGE family, putative transporter.
 
     0.764
SHK07460.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.711
SHJ87505.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.655
SHJ01141.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.652
SHJ39552.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.648
SHJ36820.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.647
SHJ08579.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.643
SHJ06961.1
Predicted glycosyl hydrolase, GH43/DUF377 family.
 
     0.626
SHJ29021.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.613
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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