STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ09634.1Transcriptional regulator, AraC family. (291 aa)    
Predicted Functional Partners:
SHJ73217.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.825
SHJ30997.1
AraC-type DNA-binding protein.
  
     0.758
SHJ08988.1
AraC-type DNA-binding protein.
  
     0.751
SHK00381.1
AraC-type DNA-binding protein.
  
   0.745
SHI98685.1
Transcriptional regulator, AraC family.
  
   0.677
SHJ09594.1
Predicted dehydrogenase.
 
     0.602
SHI53728.1
Transcriptional regulator, AraC family.
  
     0.580
SHJ79891.1
Transcriptional regulator, AraC family.
  
     0.512
SHI68839.1
Helix-turn-helix domain-containing protein.
  
     0.507
SHJ09562.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
     0.470
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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