STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ10384.1L-fucose dehydrogenase. (264 aa)    
Predicted Functional Partners:
SHJ37693.1
Amino acid adenylation domain-containing protein.
  
 0.957
SHI91719.1
L-fuconolactonase.
 
 
  0.935
SHJ10465.1
L-rhamnose mutarotase.
 
    0.924
SHJ73217.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.874
SHK00185.1
Glutamate synthase (NADH) large subunit.
     
 0.819
SHJ10423.1
MFS transporter, FHS family, L-fucose permease.
 
    0.803
SHI97939.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.800
SHI91754.1
L-rhamnose mutarotase.
 
    0.746
SHI50573.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.686
SHI41609.1
Fructokinase.
   
  0.667
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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