STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ26433.1Hypothetical protein. (352 aa)    
Predicted Functional Partners:
SHJ26461.1
pRiA4b ORF-3-like protein.
 
     0.818
SHJ91901.1
Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.
  
     0.681
SHJ26539.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.665
SHJ26484.1
Cytochrome c oxidase assembly protein subunit 15.
 
     0.652
SHJ59573.1
Hypothetical protein.
  
     0.647
SHJ57604.1
Aspartyl protease.
  
     0.609
SHJ67421.1
Hypothetical protein.
  
     0.596
SHJ30579.1
FKBP-type peptidyl-prolyl cis-trans isomerase.
  
     0.586
SHJ85778.1
Protein of unknown function.
  
     0.586
SHJ49215.1
Surface antigen.
  
     0.582
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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