STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ26915.1Nitrilase. (314 aa)    
Predicted Functional Partners:
SHJ73217.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
 
 
  0.892
SHJ49413.1
Aspartate aminotransferase.
 
 
 0.880
SHI39992.1
4-hydroxyphenylpyruvate dioxygenase.
   
 0.873
SHK00185.1
Glutamate synthase (NADH) large subunit.
    
 0.872
SHJ49581.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
   
  0.869
SHK00219.1
Glutamate synthase (NADH) small subunit.
  
 0.868
SHJ23633.1
Glutamine synthetase.
    
 0.867
SHJ51138.1
Aspartate aminotransferase.
  
 
 0.861
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.860
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
    
  0.860
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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