STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ20798.1Tetratricopeptide repeat-containing protein. (1007 aa)    
Predicted Functional Partners:
SHJ20841.1
Hypothetical protein.
 
     0.951
SHJ26512.1
Outer membrane protein OmpA.
 
 
 0.891
SHI49250.1
WD40-like Beta Propeller Repeat.
 
 
 0.859
SHJ67118.1
WD40-like Beta Propeller Repeat.
 
 
 0.833
SHJ84558.1
LysM repeat-containing protein.
 
  
  0.765
SHI96049.1
CarboxypepD_reg-like domain-containing protein.
  
     0.751
SHJ81792.1
Outer membrane transport energization protein ExbD.
 
  
 0.750
SHK00036.1
Outer membrane transport energization protein ExbD.
 
  
 0.750
SHJ81766.1
Hypothetical protein.
 
   
 0.747
SHK00017.1
Outer membrane transport energization protein TonB.
 
   
 0.747
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.