STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ28576.1Glycosyltransferase involved in cell wall bisynthesis. (428 aa)    
Predicted Functional Partners:
SHJ28602.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
    0.956
SHJ28631.1
Tetratricopeptide repeat-containing protein.
 
     0.844
SHJ28460.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 
 0.822
SHJ00661.1
Hypothetical protein.
 
    0.816
SHJ28489.1
Hypothetical protein.
     0.792
SHJ28546.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.775
SHJ28666.1
Hypothetical protein.
  
     0.754
SHJ89012.1
Hypothetical protein.
  
     0.735
SHI98061.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
  
 0.659
SHJ28720.1
Uncharacterized conserved protein, contains FIST_N domain.
  
     0.659
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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