STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ38854.1Carbamoyl-phosphate synthase large subunit. (322 aa)    
Predicted Functional Partners:
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
  
 0.990
SHJ38890.1
Putative hydrolase of the HAD superfamily.
     0.976
SHI66811.1
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.956
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.956
SHJ38789.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
   
 0.947
SHK00185.1
Glutamate synthase (NADH) large subunit.
  
 
 0.941
SHI44788.1
Amidophosphoribosyltransferase.
  
 
 0.939
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.883
SHJ23633.1
Glutamine synthetase.
  
 
 0.874
SHI66580.1
N-succinyl-L-ornithine transcarbamylase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
 
 0.872
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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