STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ39552.1TonB-linked outer membrane protein, SusC/RagA family. (1100 aa)    
Predicted Functional Partners:
SHJ39585.1
Starch-binding associating with outer membrane.
 
 
   0.952
SHJ09127.1
Starch-binding associating with outer membrane.
  
 
   0.842
SHJ62404.1
Starch-binding associating with outer membrane.
  
 
   0.802
SHK07489.1
Starch-binding associating with outer membrane.
  
 
   0.799
SHJ87521.1
Starch-binding associating with outer membrane.
  
 
   0.794
SHJ03649.1
Starch-binding associating with outer membrane.
  
 
   0.793
SHJ85299.1
Starch-binding associating with outer membrane.
  
 
   0.769
SHK00458.1
Starch-binding associating with outer membrane.
  
 
   0.755
SHJ56937.1
Starch-binding associating with outer membrane.
  
 
   0.737
SHJ08550.1
SusD family protein.
  
 
   0.699
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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