STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ41806.1Protein of unknown function. (112 aa)    
Predicted Functional Partners:
SHJ41835.1
Hypothetical protein.
 
     0.947
SHJ41767.1
Smr domain-containing protein.
 
     0.673
SHI96214.1
Hypothetical protein.
  
     0.552
SHJ51869.1
G/U mismatch-specific uracil-DNA glycosylase.
  
     0.470
SHJ12155.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
     0.458
SHJ88909.1
Protein of unknown function.
  
     0.457
SHJ40731.1
Hypothetical protein.
  
     0.455
SHJ74140.1
Hypothetical protein.
  
     0.445
SHJ94232.1
Hypothetical protein.
  
     0.441
SHJ51051.1
Anti-sigma-K factor rskA.
  
     0.436
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.