STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ35473.1Nucleotide-binding universal stress protein, UspA family. (280 aa)    
Predicted Functional Partners:
SHJ35444.1
Nucleotide-binding universal stress protein, UspA family.
 
    
0.765
SHJ35496.1
Nucleotide-binding universal stress protein, UspA family.
 
    
0.674
SHJ35394.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
 
  
 0.633
SHJ35369.1
PAS domain S-box-containing protein.
 
   
 0.630
SHJ35344.1
Hypothetical protein.
 
     0.563
SHJ35416.1
Nucleotide-binding universal stress protein, UspA family.
 
    
0.535
SHJ80738.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.456
SHJ35552.1
Nucleotide-binding universal stress protein, UspA family.
 
    
0.443
dnaX
DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
     0.407
SHJ57901.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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