STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ50513.1Predicted O-methyltransferase YrrM. (213 aa)    
Predicted Functional Partners:
SHJ03960.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
  
   0.886
SHJ08877.1
2-deoxy-D-gluconate 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
   0.872
SHI89692.1
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
   0.857
SHJ08020.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
   0.849
SHJ08355.1
Glucose 1-dehydrogenase.
 
  
   0.847
SHJ03519.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
   0.820
SHI57394.1
3-oxoacyl-[acyl-carrier-protein] reductase.
 
  
   0.815
SHJ88052.1
Hypothetical protein.
 
  
   0.814
SHJ37693.1
Amino acid adenylation domain-containing protein.
  
 0.762
SHI51637.1
Putative protease.
  
  
 0.608
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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