STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ51777.1PASTA domain-containing protein. (195 aa)    
Predicted Functional Partners:
SHJ51797.1
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.821
SHJ48600.1
Cell division protein FtsQ.
 
   
 0.771
SHJ40156.1
Hypothetical protein.
  
     0.746
SHI51868.1
Penicillin-binding protein 1A.
  
 
 0.709
SHJ58502.1
Protein of unknown function.
  
     0.701
SHI69123.1
Lipopolysaccharide-assembly.
  
     0.688
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.682
SHI45394.1
Uncharacterized metal-binding protein YceD, DUF177 family.
 
     0.679
SHI94469.1
RNA polymerase Rpb6.
 
     0.669
SHJ39368.1
Family of unknown function.
  
     0.658
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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