STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCIntegrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (296 aa)    
Predicted Functional Partners:
SHJ73217.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.831
SHJ52438.1
Putative sigma-54 modulation protein.
  
    0.738
SHJ02266.1
Phage integrase family protein.
  
     0.710
SHJ90361.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
   
 0.610
SHJ40123.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
  
 0.607
SHJ40095.1
Chromosome partitioning protein.
  
     0.604
rpsU
SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.
       0.582
SHI39405.1
Phosphoribosyl transferase domain-containing protein.
   
    0.559
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.550
SHJ46577.1
Prephenate dehydrogenase.
  
    0.519
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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