STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ57446.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (379 aa)    
Predicted Functional Partners:
SHJ60547.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.912
SHJ38045.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 0.897
SHI49627.1
UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase.
  
  0.852
SHI93951.1
Predicted dehydrogenase.
 
 
  0.823
SHI69807.1
Predicted dehydrogenase.
 
 
  0.796
SHJ37693.1
Amino acid adenylation domain-containing protein.
  
 0.748
SHI49471.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.741
SHJ57478.1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
 0.718
SHI49707.1
UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase.
  
 
  0.699
SHI50573.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
  0.645
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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