Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHI41682.1 | SHI60616.1 | SAMN04488513_101231 | SAMN04488513_101771 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Nucleoside-diphosphate-sugar epimerase. | 0.825 |
SHI41682.1 | SHJ68150.1 | SAMN04488513_101231 | SAMN04488513_10785 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Glycine C-acetyltransferase. | 0.872 |
SHI41682.1 | SHJ68383.1 | SAMN04488513_101231 | SAMN04488513_10792 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | L-threonine aldolase. | 0.863 |
SHI41682.1 | gcvP | SAMN04488513_101231 | SAMN04488513_10833 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.603 |
SHI45802.1 | SHI64692.1 | SAMN04488513_101347 | SAMN04488513_101882 | Threonine synthase-related protein. | Threonine dehydratase. | 0.865 |
SHI45802.1 | SHJ68383.1 | SAMN04488513_101347 | SAMN04488513_10792 | Threonine synthase-related protein. | L-threonine aldolase. | 0.884 |
SHI60616.1 | SHI41682.1 | SAMN04488513_101771 | SAMN04488513_101231 | Nucleoside-diphosphate-sugar epimerase. | NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.825 |
SHI60616.1 | SHI64692.1 | SAMN04488513_101771 | SAMN04488513_101882 | Nucleoside-diphosphate-sugar epimerase. | Threonine dehydratase. | 0.733 |
SHI60616.1 | SHJ68150.1 | SAMN04488513_101771 | SAMN04488513_10785 | Nucleoside-diphosphate-sugar epimerase. | Glycine C-acetyltransferase. | 0.915 |
SHI60616.1 | SHJ68383.1 | SAMN04488513_101771 | SAMN04488513_10792 | Nucleoside-diphosphate-sugar epimerase. | L-threonine aldolase. | 0.829 |
SHI60616.1 | kbl | SAMN04488513_101771 | SAMN04488513_101312 | Nucleoside-diphosphate-sugar epimerase. | 2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. | 0.935 |
SHI64692.1 | SHI45802.1 | SAMN04488513_101882 | SAMN04488513_101347 | Threonine dehydratase. | Threonine synthase-related protein. | 0.865 |
SHI64692.1 | SHI60616.1 | SAMN04488513_101882 | SAMN04488513_101771 | Threonine dehydratase. | Nucleoside-diphosphate-sugar epimerase. | 0.733 |
SHI64692.1 | SHJ12047.1 | SAMN04488513_101882 | SAMN04488513_102896 | Threonine dehydratase. | Threonine synthase. | 0.865 |
SHI64692.1 | SHJ68383.1 | SAMN04488513_101882 | SAMN04488513_10792 | Threonine dehydratase. | L-threonine aldolase. | 0.797 |
SHI64692.1 | glyA | SAMN04488513_101882 | SAMN04488513_102323 | Threonine dehydratase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.795 |
SHJ12047.1 | SHI64692.1 | SAMN04488513_102896 | SAMN04488513_101882 | Threonine synthase. | Threonine dehydratase. | 0.865 |
SHJ12047.1 | SHJ68383.1 | SAMN04488513_102896 | SAMN04488513_10792 | Threonine synthase. | L-threonine aldolase. | 0.884 |
SHJ68150.1 | SHI41682.1 | SAMN04488513_10785 | SAMN04488513_101231 | Glycine C-acetyltransferase. | NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.872 |
SHJ68150.1 | SHI60616.1 | SAMN04488513_10785 | SAMN04488513_101771 | Glycine C-acetyltransferase. | Nucleoside-diphosphate-sugar epimerase. | 0.915 |
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