STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ77199.1Outer membrane receptor proteins, mostly Fe transport. (808 aa)    
Predicted Functional Partners:
SHJ60760.1
Hypothetical protein.
  
     0.716
SHJ74799.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.680
SHJ77231.1
Histidine kinase.
 
     0.654
SHJ26565.1
C-terminal domain of CHU protein family protein.
  
     0.643
SHI55267.1
C1q domain-containing protein.
  
     0.621
SHJ03312.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.618
SHJ77262.1
Two component transcriptional regulator, LytTR family.
 
     0.613
SHJ95066.1
Hypothetical protein.
  
     0.609
SHJ37954.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.589
SHJ04836.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.577
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.