STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ79221.1Hypothetical protein. (483 aa)    
Predicted Functional Partners:
SHJ79104.1
Rhs element Vgr protein.
 
 
 0.989
SHJ79055.1
Hypothetical protein.
 
   0.988
SHJ79038.1
Baseplate J-like protein.
 
 
 0.984
SHJ79014.1
Hypothetical protein.
 
 
 
 0.979
SHJ79289.1
Protein of unknown function.
 
 
 
 0.974
SHJ79127.1
LysM domain-containing protein.
 
 
 0.971
SHJ79174.1
Conserved hypothetical phage tail region protein.
 
 
 0.966
SHJ79197.1
Conserved hypothetical phage tail region protein.
 
 
 0.966
SHJ78952.1
ATPase family associated with various cellular activities (AAA).
     0.935
SHJ78966.1
Hypothetical protein.
 
     0.911
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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