STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ79536.1Sensors of blue-light using FAD. (176 aa)    
Predicted Functional Partners:
SHJ34917.1
PAS domain S-box-containing protein.
 
 0.719
SHI59919.1
Carbohydrate-binding family 9.
   
 0.626
SHI39538.1
PAS domain S-box-containing protein.
  
 0.509
SHJ51706.1
PAS domain S-box-containing protein.
  
 0.509
SHJ80565.1
PAS domain S-box-containing protein.
  
 0.509
SHJ28744.1
PAS domain S-box-containing protein.
   
 0.504
SHJ06717.1
Signal transduction histidine kinase.
 
 
 0.467
SHI43708.1
Signal transduction histidine kinase.
  
 
 0.463
SHI96984.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 
 0.463
SHJ36707.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
 
 0.463
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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