STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ80239.1Hypothetical protein. (188 aa)    
Predicted Functional Partners:
SHJ80214.1
AraC family transcriptional regulator.
       0.781
SHI69530.1
Protein involved in gliding motility GldN.
  
     0.670
SHI37633.1
Protein involved in gliding motility GldD.
 
     0.625
SHJ80267.1
Methyltransferase domain-containing protein.
  
    0.625
SHJ47320.1
Protein involved in gliding motility GldB.
  
     0.571
SHI66206.1
Mevalonate kinase.
  
     0.550
SHI68059.1
Mevalonate kinase.
  
     0.504
SHJ70735.1
Hypothetical protein.
  
 
   0.501
SHJ73794.1
CBS domain-containing protein.
  
   
 0.474
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
   0.473
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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