STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ80405.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (262 aa)    
Predicted Functional Partners:
SHJ80425.1
Hypothetical protein.
       0.661
SHJ29075.1
Hypothetical protein.
  
     0.581
SHJ03804.1
PhoPQ-activated pathogenicity-related protein.
  
    0.579
SHJ29538.1
Neutral/alkaline non-lysosomal ceramidase, N-terminal.
  
     0.574
SHJ73423.1
Outer membrane protein OmpA.
  
   0.530
SHJ90141.1
WD40-like Beta Propeller Repeat.
  
   0.485
SHJ80382.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.478
SHK00483.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.464
SHI65009.1
Cytochrome c peroxidase.
   
   0.454
SHJ29992.1
Repeat domain-containing protein.
  
     0.452
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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