STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ80915.1Methane oxygenase PmoA. (355 aa)    
Predicted Functional Partners:
SHK00185.1
Glutamate synthase (NADH) large subunit.
    
 
 0.767
SHJ94349.1
Alpha/beta hydrolase family protein.
  
     0.698
SHJ96526.1
Hypothetical protein.
  
     0.696
SHJ80943.1
Protein of unknown function.
 
     0.667
SHJ03030.1
Repeat domain-containing protein.
  
     0.663
SHI64875.1
Protein of unknown function.
  
     0.632
SHJ94849.1
Planctomycete cytochrome C.
  
     0.621
SHI64847.1
Uncharacterized membrane protein.
  
     0.599
SHJ94815.1
Protein of unknown function.
  
     0.575
SHJ42094.1
Putative oxidoreductase C terminal domain-containing protein.
  
     0.546
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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