STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ80943.1Protein of unknown function. (208 aa)    
Predicted Functional Partners:
SHJ80490.1
Protein of unknown function.
 
     0.725
SHI60062.1
Predicted dehydrogenase.
  
     0.719
SHJ90258.1
Protein of unknown function.
  
     0.698
SHI60026.1
Predicted dehydrogenase.
  
     0.676
SHJ80915.1
Methane oxygenase PmoA.
 
     0.667
SHJ56903.1
Predicted dehydrogenase.
  
     0.664
SHI60099.1
Predicted dehydrogenase.
  
     0.649
SHI46168.1
Predicted dehydrogenase.
  
     0.600
SHJ42303.1
Trehalose utilisation.
  
     0.600
SHJ96423.1
Predicted dehydrogenase.
  
     0.590
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.