STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ81092.1Selenocysteine lyase/Cysteine desulfurase. (362 aa)    
Predicted Functional Partners:
SHI53007.1
Cysteine desulfuration protein SufE.
  
 0.867
SHI99839.1
Thioredoxin reductase (NADPH).
   
 
  0.859
SHJ48903.1
Thioredoxin reductase (NADPH).
   
 
  0.859
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.820
SHI52887.1
Fe-S cluster assembly ATP-binding protein.
  
 
 0.794
SHJ08677.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
 0.792
SHI34800.1
Thioredoxin reductase (NADPH).
   
 
  0.774
SHJ46241.1
Thioredoxin reductase (NADPH).
   
 
  0.774
SHI52855.1
Iron-regulated ABC transporter membrane component SufB.
  
 0.767
SHI52926.1
Fe-S cluster assembly protein SufD.
  
 0.767
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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