STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ87481.1FecR family protein. (391 aa)    
Predicted Functional Partners:
SHJ87456.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.802
SHJ80716.1
FecR family protein.
  
  
 
0.687
SHJ87505.1
TonB-linked outer membrane protein, SusC/RagA family.
 
    0.665
SHJ70002.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.661
SHJ62298.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.656
SHI92197.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.645
SHK07427.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.611
SHJ87521.1
Starch-binding associating with outer membrane.
 
     0.610
SHI86637.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.607
SHI70140.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.555
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.