STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ95392.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
SHJ95420.1
OmpA family protein.
 
     0.827
SHJ95351.1
Subtilase family protein.
       0.661
SHJ95269.1
CHAT domain-containing protein.
 
     0.593
SHJ95310.1
Hypothetical protein.
       0.583
SHI55549.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.498
SHJ74262.1
5'(3')-deoxyribonucleotidase.
  
     0.482
SHI39372.1
Hypothetical protein.
  
     0.433
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.425
SHI37458.1
Protein of unknown function.
  
     0.409
SHI93132.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.