Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ58883.1 | SHJ66914.1 | SAMN04488513_10682 | SAMN04488513_10745 | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. | 0.913 |
SHJ58883.1 | SHK04846.1 | SAMN04488513_10682 | SAMN04488513_11914 | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | Outer membrane protein OmpA. | 0.524 |
SHJ66914.1 | SHJ58883.1 | SAMN04488513_10745 | SAMN04488513_10682 | Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.913 |
SHJ66914.1 | SHK04846.1 | SAMN04488513_10745 | SAMN04488513_11914 | Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. | Outer membrane protein OmpA. | 0.592 |
SHJ85134.1 | SHK04846.1 | SAMN04488513_11077 | SAMN04488513_11914 | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | Outer membrane protein OmpA. | 0.588 |
SHJ91582.1 | SHK04846.1 | SAMN04488513_11257 | SAMN04488513_11914 | Chemotaxis protein MotB. | Outer membrane protein OmpA. | 0.642 |
SHK04814.1 | SHK04846.1 | SAMN04488513_11913 | SAMN04488513_11914 | Lipocalin-like domain-containing protein. | Outer membrane protein OmpA. | 0.922 |
SHK04814.1 | SHK04877.1 | SAMN04488513_11913 | SAMN04488513_11915 | Lipocalin-like domain-containing protein. | Dehydrogenase (flavoprotein). | 0.565 |
SHK04814.1 | SHK04905.1 | SAMN04488513_11913 | SAMN04488513_11916 | Lipocalin-like domain-containing protein. | Methyltransferase domain-containing protein. | 0.534 |
SHK04814.1 | SHK04928.1 | SAMN04488513_11913 | SAMN04488513_11917 | Lipocalin-like domain-containing protein. | Predicted naringenin-chalcone synthase. | 0.566 |
SHK04846.1 | SHJ58883.1 | SAMN04488513_11914 | SAMN04488513_10682 | Outer membrane protein OmpA. | Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.524 |
SHK04846.1 | SHJ66914.1 | SAMN04488513_11914 | SAMN04488513_10745 | Outer membrane protein OmpA. | Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family. | 0.592 |
SHK04846.1 | SHJ85134.1 | SAMN04488513_11914 | SAMN04488513_11077 | Outer membrane protein OmpA. | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | 0.588 |
SHK04846.1 | SHJ91582.1 | SAMN04488513_11914 | SAMN04488513_11257 | Outer membrane protein OmpA. | Chemotaxis protein MotB. | 0.642 |
SHK04846.1 | SHK04814.1 | SAMN04488513_11914 | SAMN04488513_11913 | Outer membrane protein OmpA. | Lipocalin-like domain-containing protein. | 0.922 |
SHK04846.1 | SHK04877.1 | SAMN04488513_11914 | SAMN04488513_11915 | Outer membrane protein OmpA. | Dehydrogenase (flavoprotein). | 0.574 |
SHK04846.1 | SHK04905.1 | SAMN04488513_11914 | SAMN04488513_11916 | Outer membrane protein OmpA. | Methyltransferase domain-containing protein. | 0.545 |
SHK04846.1 | SHK04928.1 | SAMN04488513_11914 | SAMN04488513_11917 | Outer membrane protein OmpA. | Predicted naringenin-chalcone synthase. | 0.575 |
SHK04846.1 | adk | SAMN04488513_11914 | SAMN04488513_10844 | Outer membrane protein OmpA. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.613 |
SHK04846.1 | guaA | SAMN04488513_11914 | SAMN04488513_11055 | Outer membrane protein OmpA. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.588 |
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