STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL41032.1Predicted PurR-regulated permease PerM. (366 aa)    
Predicted Functional Partners:
SDL41052.1
Hypothetical protein.
       0.795
SDL41009.1
Protein of unknown function.
       0.791
SDL40968.1
16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.612
SDM59200.1
Hypothetical protein.
  
     0.484
SDL69637.1
Protein of unknown function.
  
     0.472
SDM09834.1
Protein of unknown function.
  
     0.445
SDL45631.1
Hypothetical protein.
  
     0.420
SDM87063.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.420
SDL72759.1
Competence protein ComEC.
 
     0.417
SDL40934.1
Hypothetical protein.
       0.407
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.