STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL65361.1Rhamnogalacturonyl hydrolase YesR. (375 aa)    
Predicted Functional Partners:
SDM04525.1
Protein of unknown function.
 
     0.925
SDM45455.1
Alginate lyase.
  
     0.597
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.579
SDL65394.1
Cytochrome c.
       0.536
SDM48301.1
Starch-binding associating with outer membrane.
  
     0.499
SDM45272.1
Glycosyl hydrolases family 2, sugar binding domain.
     0.496
SDM29992.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
    0.461
SDL65422.1
Hypothetical protein.
       0.458
SDL93254.1
Starch-binding associating with outer membrane.
  
     0.458
SDL50149.1
Starch-binding associating with outer membrane.
  
     0.438
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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