STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL71928.1Hypothetical protein. (439 aa)    
Predicted Functional Partners:
SDL71899.1
Hypothetical protein.
 
     0.796
SDL71714.1
Hypothetical protein.
 
     0.791
SDL71849.1
Protein of unknown function, DUF547.
 
     0.735
SDL71875.1
Hypothetical protein.
       0.629
SDM16084.1
Regulator of sigma E protease.
  
  
 0.582
tsf
Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.547
SDL64989.1
Hypothetical protein.
  
     0.542
SDL71768.1
Pyridine nucleotide-disulphide oxidoreductase.
 
 
   0.541
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
    0.538
SDL71825.1
Hypothetical protein.
       0.532
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.