STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL84542.1Lipopolysaccharide export system permease protein. (481 aa)    
Predicted Functional Partners:
SDM58861.1
Lipopolysaccharide export system ATP-binding protein.
 
 
 0.968
SDM32948.1
Lipopolysaccharide export system permease protein.
  
 
  0.956
SDM96108.1
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component.
   
 0.947
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    0.905
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.835
SDL84517.1
Outer membrane lipoprotein-sorting protein.
 
     0.720
SDM86480.1
Protein of unknown function.
  
     0.720
SDM74949.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.709
SDM74910.1
Beta-barrel assembly machine subunit BamA.
 
     0.636
SDL84496.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
       0.623
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.