STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL91853.1Phage shock protein C (PspC) family protein. (578 aa)    
Predicted Functional Partners:
SDL91800.1
Transcriptional regulator, PadR family.
     0.922
SDL28699.1
Hypothetical protein.
   
 
 0.876
SDN07491.1
Signal transduction histidine kinase.
   
 
 0.876
SDL91749.1
Hypothetical protein.
 
    0.769
SDM74719.1
Putative membrane protein.
  
    0.766
SDL91900.1
Putative auto-transporter adhesin, head GIN domain.
 
  
 0.734
SDM91679.1
Signal transduction histidine kinase.
  
   0.650
SDM92835.1
PAS domain S-box-containing protein.
  
   0.617
SDL88467.1
DNA-binding transcriptional regulator, MarR family.
 
   
 0.578
SDM23094.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.558
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.