Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM04666.1 | SDM04710.1 | SAMN04488514_104254 | SAMN04488514_104256 | PAS domain S-box-containing protein. | Nitrite reductase (NADH) small subunit. | 0.793 |
SDM04666.1 | SDM04807.1 | SAMN04488514_104254 | SAMN04488514_104260 | PAS domain S-box-containing protein. | MFS transporter, NNP family, nitrate/nitrite transporter. | 0.606 |
SDM04666.1 | SDM04835.1 | SAMN04488514_104254 | SAMN04488514_104261 | PAS domain S-box-containing protein. | Alginate export. | 0.739 |
SDM04666.1 | SDM04856.1 | SAMN04488514_104254 | SAMN04488514_104262 | PAS domain S-box-containing protein. | Two component transcriptional regulator, LuxR family. | 0.913 |
SDM04666.1 | SDM05019.1 | SAMN04488514_104254 | SAMN04488514_104268 | PAS domain S-box-containing protein. | Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.679 |
SDM04666.1 | SDM05045.1 | SAMN04488514_104254 | SAMN04488514_104269 | PAS domain S-box-containing protein. | Rubredoxin. | 0.790 |
SDM04666.1 | SDM74277.1 | SAMN04488514_104254 | SAMN04488514_1149 | PAS domain S-box-containing protein. | OmpA family protein. | 0.411 |
SDM04710.1 | SDM04666.1 | SAMN04488514_104256 | SAMN04488514_104254 | Nitrite reductase (NADH) small subunit. | PAS domain S-box-containing protein. | 0.793 |
SDM04710.1 | SDM04807.1 | SAMN04488514_104256 | SAMN04488514_104260 | Nitrite reductase (NADH) small subunit. | MFS transporter, NNP family, nitrate/nitrite transporter. | 0.975 |
SDM04710.1 | SDM04835.1 | SAMN04488514_104256 | SAMN04488514_104261 | Nitrite reductase (NADH) small subunit. | Alginate export. | 0.537 |
SDM04710.1 | SDM05019.1 | SAMN04488514_104256 | SAMN04488514_104268 | Nitrite reductase (NADH) small subunit. | Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.995 |
SDM04710.1 | SDM05045.1 | SAMN04488514_104256 | SAMN04488514_104269 | Nitrite reductase (NADH) small subunit. | Rubredoxin. | 0.875 |
SDM04807.1 | SDM04666.1 | SAMN04488514_104260 | SAMN04488514_104254 | MFS transporter, NNP family, nitrate/nitrite transporter. | PAS domain S-box-containing protein. | 0.606 |
SDM04807.1 | SDM04710.1 | SAMN04488514_104260 | SAMN04488514_104256 | MFS transporter, NNP family, nitrate/nitrite transporter. | Nitrite reductase (NADH) small subunit. | 0.975 |
SDM04807.1 | SDM04835.1 | SAMN04488514_104260 | SAMN04488514_104261 | MFS transporter, NNP family, nitrate/nitrite transporter. | Alginate export. | 0.822 |
SDM04807.1 | SDM05019.1 | SAMN04488514_104260 | SAMN04488514_104268 | MFS transporter, NNP family, nitrate/nitrite transporter. | Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.985 |
SDM04807.1 | SDM05045.1 | SAMN04488514_104260 | SAMN04488514_104269 | MFS transporter, NNP family, nitrate/nitrite transporter. | Rubredoxin. | 0.896 |
SDM04835.1 | SDM04666.1 | SAMN04488514_104261 | SAMN04488514_104254 | Alginate export. | PAS domain S-box-containing protein. | 0.739 |
SDM04835.1 | SDM04710.1 | SAMN04488514_104261 | SAMN04488514_104256 | Alginate export. | Nitrite reductase (NADH) small subunit. | 0.537 |
SDM04835.1 | SDM04807.1 | SAMN04488514_104261 | SAMN04488514_104260 | Alginate export. | MFS transporter, NNP family, nitrate/nitrite transporter. | 0.822 |
page 1 of 3