STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM05773.1Xylose isomerase-like TIM barrel. (349 aa)    
Predicted Functional Partners:
SDM05748.1
Trehalose utilisation.
 
     0.923
SDM05794.1
Predicted dehydrogenase.
 
 
  0.916
SDM05644.1
Hypothetical protein.
 
     0.800
SDM45481.1
Protein of unknown function.
 
     0.786
SDM05967.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
     0.781
SDM45548.1
Putative heme-binding domain-containing protein.
 
     0.776
SDM42035.1
Protein of unknown function.
  
     0.740
SDM05671.1
D-psicose/D-tagatose/L-ribulose 3-epimerase.
 
     0.729
SDM45518.1
Repeat domain-containing protein.
  
     0.705
SDM53037.1
Protein of unknown function.
  
     0.656
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.