STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM11855.1Outer membrane protein beta-barrel domain-containing protein. (511 aa)    
Predicted Functional Partners:
SDM84266.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
  0.865
SDM11906.1
Hypothetical protein.
 
     0.850
SDL62251.1
Signal transduction histidine kinase.
     
 0.786
SDL31379.1
Hypothetical protein.
  
     0.671
SDN03029.1
Protein of unknown function.
  
     0.666
SDM23129.1
Hypothetical protein.
  
     0.648
SDM11881.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.643
SDM15642.1
Outer membrane protein TolC.
  
     0.643
SDM80712.1
Hypothetical protein.
  
     0.613
SDN03389.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
     0.596
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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