Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL72484.1 | SDL72510.1 | SAMN04488514_102487 | SAMN04488514_102488 | Hypothetical protein. | LPS export ABC transporter protein LptC. | 0.875 |
SDL72484.1 | SDM02325.1 | SAMN04488514_102487 | SAMN04488514_104158 | Hypothetical protein. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.772 |
SDL72484.1 | SDM09834.1 | SAMN04488514_102487 | SAMN04488514_10520 | Hypothetical protein. | Protein of unknown function. | 0.784 |
SDL72484.1 | SDM47440.1 | SAMN04488514_102487 | SAMN04488514_10981 | Hypothetical protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.772 |
SDL72484.1 | SDM62467.1 | SAMN04488514_102487 | SAMN04488514_111141 | Hypothetical protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.766 |
SDL72484.1 | SDM87090.1 | SAMN04488514_102487 | SAMN04488514_11631 | Hypothetical protein. | Biopolymer transport protein ExbD. | 0.772 |
SDL72484.1 | SDM87116.1 | SAMN04488514_102487 | SAMN04488514_11632 | Hypothetical protein. | Biopolymer transport protein ExbD. | 0.774 |
SDL72484.1 | SDN03059.1 | SAMN04488514_102487 | SAMN04488514_12029 | Hypothetical protein. | Hypothetical protein. | 0.775 |
SDL72510.1 | SDL72484.1 | SAMN04488514_102488 | SAMN04488514_102487 | LPS export ABC transporter protein LptC. | Hypothetical protein. | 0.875 |
SDL72510.1 | SDL99788.1 | SAMN04488514_102488 | SAMN04488514_10462 | LPS export ABC transporter protein LptC. | Cell division protein FtsQ. | 0.721 |
SDL72510.1 | SDM09834.1 | SAMN04488514_102488 | SAMN04488514_10520 | LPS export ABC transporter protein LptC. | Protein of unknown function. | 0.798 |
SDL72510.1 | SDN03059.1 | SAMN04488514_102488 | SAMN04488514_12029 | LPS export ABC transporter protein LptC. | Hypothetical protein. | 0.521 |
SDL99788.1 | SDL72510.1 | SAMN04488514_10462 | SAMN04488514_102488 | Cell division protein FtsQ. | LPS export ABC transporter protein LptC. | 0.721 |
SDL99788.1 | SDM09834.1 | SAMN04488514_10462 | SAMN04488514_10520 | Cell division protein FtsQ. | Protein of unknown function. | 0.837 |
SDM02325.1 | SDL72484.1 | SAMN04488514_104158 | SAMN04488514_102487 | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Hypothetical protein. | 0.772 |
SDM02325.1 | SDM09811.1 | SAMN04488514_104158 | SAMN04488514_10519 | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Membrane-bound lytic murein transglycosylase D. | 0.530 |
SDM02325.1 | SDM09834.1 | SAMN04488514_104158 | SAMN04488514_10520 | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Protein of unknown function. | 0.764 |
SDM02325.1 | SDM87090.1 | SAMN04488514_104158 | SAMN04488514_11631 | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Biopolymer transport protein ExbD. | 0.942 |
SDM02325.1 | SDM87116.1 | SAMN04488514_104158 | SAMN04488514_11632 | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Biopolymer transport protein ExbD. | 0.942 |
SDM02325.1 | SDN03059.1 | SAMN04488514_104158 | SAMN04488514_12029 | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Hypothetical protein. | 0.770 |
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