STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM11330.1Protein CcmA, bactofilin family. (142 aa)    
Predicted Functional Partners:
SDM11307.1
Protein involved in gliding motility SprE.
 
     0.769
SDM11351.1
Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter.
       0.713
SDM11370.1
Hypothetical protein.
       0.707
SDM65138.1
Peptidase family M23.
 
   
 0.693
SDM74343.1
AsmA-like C-terminal region.
  
     0.588
SDM59200.1
Hypothetical protein.
  
    0.554
SDM09970.1
Peptidase family M23.
 
   
 0.527
atpB
ATP synthase F0 subcomplex A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
       0.525
SDM11281.1
ABC-2 type transport system ATP-binding protein.
       0.461
SDL66301.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
   
 0.430
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.