STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM30769.1Hypothetical protein. (418 aa)    
Predicted Functional Partners:
SDM30791.1
Protein of unknown function.
 
     0.949
SDM30819.1
Galactose oxidase, central domain.
 
     0.879
SDL26614.1
Outer membrane protein.
  
     0.705
SDM30740.1
EF hand.
       0.620
SDM42517.1
Hypothetical protein.
  
     0.577
SDM05994.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.528
SDL74261.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.498
SDL25269.1
Hypothetical protein.
 
     0.487
SDM36269.1
Hypothetical protein.
  
     0.484
SDM30894.1
Two component transcriptional regulator, LytTR family.
 
     0.478
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.