STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM32948.1Lipopolysaccharide export system permease protein. (341 aa)    
Predicted Functional Partners:
SDM58861.1
Lipopolysaccharide export system ATP-binding protein.
 
 
 0.982
SDL84542.1
Lipopolysaccharide export system permease protein.
  
 
  0.956
SDM96108.1
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component.
   
 0.947
tgt
tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]
 
  
 0.890
SDM74910.1
Beta-barrel assembly machine subunit BamA.
 
     0.740
SDL99142.1
Surface antigen.
 
     0.711
SDL40649.1
Hypothetical protein.
 
 
 0.689
SDL66705.1
Ig-like domain-containing protein.
 
     0.654
SDL73196.1
Penicillin-binding protein 2.
  
     0.624
SDM92932.1
PASTA domain-containing protein.
  
     0.595
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.