STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM36177.1Pectate lyase, PelA/Pel-15E family. (384 aa)    
Predicted Functional Partners:
SDM27999.1
Lysophospholipase L1.
     0.883
SDM71324.1
Lysophospholipase L1.
     0.862
SDM71260.1
Lysophospholipase L1.
     0.838
SDM27949.1
Pectate lyase superfamily protein; Belongs to the glycosyl hydrolase 28 family.
 
  0.793
SDM36142.1
Protein of unknown function.
 
  0.792
SDM45098.1
Pectate lyase superfamily protein; Belongs to the glycosyl hydrolase 28 family.
 
  0.790
SDM36207.1
Hypothetical protein.
       0.709
SDM40228.1
Inosine-uridine preferring nucleoside hydrolase.
  
  0.641
SDM52004.1
Protein of unknown function.
  
  0.620
SDM30410.1
Endo-1,4-beta-xylanase.
  
  
  0.596
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.