STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM38048.1Uncharacterized protein YjbI, contains pentapeptide repeats. (192 aa)    
Predicted Functional Partners:
SDM38015.1
Hypothetical protein.
       0.773
SDM37954.1
Hypothetical protein.
 
     0.641
SDL37273.1
PAS domain S-box-containing protein.
     
 0.596
SDM37981.1
Hypothetical protein.
       0.574
SDL26847.1
PAS domain S-box-containing protein.
     
 0.570
SDM38075.1
Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.547
SDM38107.1
Uncharacterized conserved protein YdhG, YjbR/CyaY-like superfamily, DUF1801 family.
       0.541
SDL63735.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.529
SDL31049.1
Topoisomerase-4 subunit B.
   
 
 0.526
SDL74391.1
Putative auto-transporter adhesin, head GIN domain.
  
 
   0.523
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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