STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM48034.1Tetratricopeptide repeat-containing protein. (648 aa)    
Predicted Functional Partners:
SDM48063.1
Two component transcriptional regulator, LytTR family.
 
  0.961
SDL89593.1
Two component transcriptional regulator, LytTR family.
  
  0.933
SDL89848.1
Two component transcriptional regulator, LytTR family.
  
  0.927
SDL46296.1
Two component transcriptional regulator, LytTR family.
  
  0.837
SDL47958.1
Two component transcriptional regulator, LytTR family.
  
  0.834
SDM48004.1
Von Willebrand factor type A domain-containing protein.
 
     0.833
SDM28664.1
Two component transcriptional regulator, LytTR family.
  
  0.819
SDM32470.1
Two component transcriptional regulator, LytTR family.
  
  0.814
SDM30709.1
Two component transcriptional regulator, LytTR family.
  
  0.813
SDM30894.1
Two component transcriptional regulator, LytTR family.
  
  0.813
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.