STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM55919.1Protein involved in gliding motility EpsA. (260 aa)    
Predicted Functional Partners:
SDM55891.1
Chain length determinant protein.
 
 0.999
SDL39346.1
Capsular exopolysaccharide family.
 0.998
SDM55312.1
Capsular exopolysaccharide family.
 0.998
SDL39366.1
Polysaccharide export outer membrane protein.
  
  
 
0.881
SDM55963.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.809
SDM55862.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.776
SDM55835.1
Hypothetical protein.
       0.762
SDM55792.1
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase.
       0.741
SDL40386.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.697
SDM55130.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.696
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.