STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM52467.1Fn3 associated. (703 aa)    
Predicted Functional Partners:
SDM52441.1
Protein of unknown function.
 
     0.945
SDM52415.1
Planctomycete cytochrome C.
 
     0.927
SDL93388.1
Hypothetical protein.
     0.774
SDM42135.1
Hypothetical protein.
 
     0.773
SDM87949.1
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.771
SDM64546.1
Planctomycete cytochrome C.
  
     0.770
SDM64579.1
Protein of unknown function.
  
     0.762
SDN14280.1
Protein of unknown function.
  
     0.762
SDL93426.1
Protein of unknown function.
  
     0.758
SDM42064.1
Carbohydrate binding module (family 6).
  
     0.756
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.