STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM66599.1Uncharacterized conserved protein YbbC, DUF1343 family. (439 aa)    
Predicted Functional Partners:
SDM13089.1
CubicO group peptidase, beta-lactamase class C family.
    0.972
SDL40491.1
Beta-glucosidase.
 
 0.834
SDM39363.1
CubicO group peptidase, beta-lactamase class C family.
 
 
    0.818
SDL41312.1
Beta-glucosidase.
 
  0.775
SDM66564.1
Transcriptional regulator, DeoR family.
       0.634
murQ-2
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
    0.485
SDM66535.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.460
SDM66392.1
Transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      0.419
SDM24751.1
CubicO group peptidase, beta-lactamase class C family.
 
    0.416
SDM66506.1
Starch-binding associating with outer membrane.
       0.414
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.