STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM83927.1RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (221 aa)    
Predicted Functional Partners:
SDM83958.1
Hypothetical protein.
 
     0.806
SDM83890.1
Hypothetical protein.
       0.773
SDM48634.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.751
SDL63299.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.723
SDL91596.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.714
SDL88995.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.686
SDL38048.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.676
SDM77884.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.652
SDM67047.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.651
SDM41870.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.650
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.