STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN00794.1Starch-binding associating with outer membrane. (545 aa)    
Predicted Functional Partners:
SDN00735.1
TonB-linked outer membrane protein, SusC/RagA family.
 
   0.956
SDM71473.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.864
SDL49349.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.825
SDM60366.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.812
SDL89217.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.804
SDM88374.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.780
SDL32973.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.774
SDL26739.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.772
SDM31228.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.746
SDM74565.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.742
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.