SDN00942.1 protein (Kriegella aquimaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDN00942.1

Protein of unknown function. (265 aa)

Predicted Functional Partners:

SDN00971.1

0.746

SDM54375.1

0.570

SDN00882.1

0.533

SDM71227.1

0.515

SDM71293.1

0.512

SDM88858.1

0.505

SDM98014.1

0.501

SDN07282.1

0.501

SDM81300.1

0.483

SDM69914.1

0.474

Your Current Organism:

Kriegella aquimaris

NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDM54375.1	SDM71227.1	SAMN04488514_11096	SAMN04488514_11376	Putative membrane-bound dehydrogenase domain-containing protein.	Hypothetical protein.	0.774
SDM54375.1	SDM71293.1	SAMN04488514_11096	SAMN04488514_11378	Putative membrane-bound dehydrogenase domain-containing protein.	Hypothetical protein.	0.774
SDM54375.1	SDM81300.1	SAMN04488514_11096	SAMN04488514_11520	Putative membrane-bound dehydrogenase domain-containing protein.	BNR/Asp-box repeat-containing protein.	0.692
SDM54375.1	SDM88858.1	SAMN04488514_11096	SAMN04488514_11690	Putative membrane-bound dehydrogenase domain-containing protein.	Hypothetical protein.	0.774
SDM54375.1	SDM98014.1	SAMN04488514_11096	SAMN04488514_11878	Putative membrane-bound dehydrogenase domain-containing protein.	Enterochelin esterase.	0.926
SDM54375.1	SDN00882.1	SAMN04488514_11096	SAMN04488514_11939	Putative membrane-bound dehydrogenase domain-containing protein.	GDSL-like Lipase/Acylhydrolase.	0.609
SDM54375.1	SDN00942.1	SAMN04488514_11096	SAMN04488514_11941	Putative membrane-bound dehydrogenase domain-containing protein.	Protein of unknown function.	0.570
SDM69914.1	SDM81300.1	SAMN04488514_11333	SAMN04488514_11520	BNR repeat-like domain-containing protein.	BNR/Asp-box repeat-containing protein.	0.552
SDM69914.1	SDN00942.1	SAMN04488514_11333	SAMN04488514_11941	BNR repeat-like domain-containing protein.	Protein of unknown function.	0.474
SDM69914.1	SDN07282.1	SAMN04488514_11333	SAMN04488514_12229	BNR repeat-like domain-containing protein.	N-terminus of Esterase_SGNH_hydro-type.	0.585
SDM71227.1	SDM54375.1	SAMN04488514_11376	SAMN04488514_11096	Hypothetical protein.	Putative membrane-bound dehydrogenase domain-containing protein.	0.774
SDM71227.1	SDM81300.1	SAMN04488514_11376	SAMN04488514_11520	Hypothetical protein.	BNR/Asp-box repeat-containing protein.	0.726
SDM71227.1	SDM98014.1	SAMN04488514_11376	SAMN04488514_11878	Hypothetical protein.	Enterochelin esterase.	0.546
SDM71227.1	SDN00942.1	SAMN04488514_11376	SAMN04488514_11941	Hypothetical protein.	Protein of unknown function.	0.515
SDM71227.1	SDN07282.1	SAMN04488514_11376	SAMN04488514_12229	Hypothetical protein.	N-terminus of Esterase_SGNH_hydro-type.	0.577
SDM71293.1	SDM54375.1	SAMN04488514_11378	SAMN04488514_11096	Hypothetical protein.	Putative membrane-bound dehydrogenase domain-containing protein.	0.774
SDM71293.1	SDM81300.1	SAMN04488514_11378	SAMN04488514_11520	Hypothetical protein.	BNR/Asp-box repeat-containing protein.	0.730
SDM71293.1	SDM98014.1	SAMN04488514_11378	SAMN04488514_11878	Hypothetical protein.	Enterochelin esterase.	0.527
SDM71293.1	SDN00942.1	SAMN04488514_11378	SAMN04488514_11941	Hypothetical protein.	Protein of unknown function.	0.512
SDM71293.1	SDN07282.1	SAMN04488514_11378	SAMN04488514_12229	Hypothetical protein.	N-terminus of Esterase_SGNH_hydro-type.	0.586